CLI Reference#

Complete reference for the bfabric-app-runner command-line interface.

run#

run workunit#

Run a workunit end-to-end (dispatch, process all chunks, register outputs).

bfabric-app-runner run workunit <app_definition> <scratch_root> <workunit_ref>

Argument	Description
`app_definition`	Path to the app.yml specification file
`scratch_root`	Root directory for scratch/work files
`workunit_ref`	Workunit reference (ID or URI)

prepare#

prepare workunit#

Prepare a workunit for execution (resolve inputs, set up work directory).

bfabric-app-runner prepare workunit <app_spec> <work_dir> <workunit_ref> [options]

Argument	Description
`app_spec`	Path to the app.yml specification file
`work_dir`	Working directory for the workunit
`workunit_ref`	Workunit reference (ID or URI)

Option	Description
`--ssh-user`	SSH user for remote file access
`--force-storage`	Override the storage location
`--force-app-version`	Force a specific application version
`--read-only`	Prepare in read-only mode
`--use-external-runner`	Use an external runner for execution

action#

Commands for running individual workflow phases. These commands are intended to be run from inside a prepared working directory — they read their configuration from an action.yml file generated by prepare workunit.

action run-all#

Run all stages of a dispatched app.

bfabric-app-runner action run-all

action dispatch#

Dispatch a workunit definition (create chunk directories).

bfabric-app-runner action dispatch

action inputs#

Prepare input files for a chunk.

bfabric-app-runner action inputs

action process#

Process a chunk.

bfabric-app-runner action process

action outputs#

bfabric-app-runner action outputs

inputs#

Commands for managing input files.

inputs prepare#

Download and prepare input files into the target folder.

bfabric-app-runner inputs prepare <inputs_yaml> [target_folder] [options]

Argument	Description
`inputs_yaml`	Path to the inputs YAML specification file
`target_folder`	Target directory (optional, defaults to cwd)

Option	Description
`--ssh-user`	SSH user for remote file access
`--filter`	Only prepare inputs matching this filename pattern

inputs list#

List all defined inputs and their status.

bfabric-app-runner inputs list <inputs_yaml> [target_folder] [options]

Argument	Description
`inputs_yaml`	Path to the inputs YAML specification file
`target_folder`	Target directory (optional, defaults to cwd)

Option	Description
`--check`	Also check whether each input exists on disk

inputs check#

Verify that all expected input files are present.

bfabric-app-runner inputs check <inputs_yaml> [target_folder]

Argument	Description
`inputs_yaml`	Path to the inputs YAML specification file
`target_folder`	Target directory (optional, defaults to cwd)

inputs clean#

Remove prepared input files from the target folder.

bfabric-app-runner inputs clean <inputs_yaml> [target_folder] [options]

Argument	Description
`inputs_yaml`	Path to the inputs YAML specification file
`target_folder`	Target directory (optional, defaults to cwd)

Option	Description
`--filter`	Only clean inputs matching this filename pattern

outputs#

Commands for registering output files in B-Fabric.

outputs register#

bfabric-app-runner outputs register <outputs_yaml> <workunit_ref> [options]

Argument	Description
`outputs_yaml`	Path to the outputs YAML specification file
`workunit_ref`	Workunit reference (ID or URI)

Option	Description
`--ssh-user`	SSH user for remote file transfers
`--force-storage`	Override the storage location

outputs register-single-file#

bfabric-app-runner outputs register-single-file <local_path> [options]

Argument	Description
`local_path`	Path to the local file to register

Option	Description
`--workunit-ref` (required)	Workunit reference (ID or URI)
`--store-entry-path`	Filename in B-Fabric storage
`--store-folder-path`	Directory path within storage
`--update-existing`	Update behavior: `NO`, `IF_EXISTS`, or `REQUIRED`
`--ssh-user`	SSH user for remote transfers
`--force-storage`	Override the storage location

validate#

Commands for validating specification files.

validate app-spec#

Validate an app specification file.

bfabric-app-runner validate app-spec <app_yaml> [options]

Argument	Description
`app_yaml`	Path to the app.yml file

Option	Description
`--app-id`	Application ID for template variable resolution
`--app-name`	Application name for template variable resolution

validate app-spec-template#

Validate an app specification template (before variable resolution).

bfabric-app-runner validate app-spec-template <yaml_file>

Argument	Description
`yaml_file`	Path to the app spec template file

validate inputs-spec#

Validate an inputs specification file.

bfabric-app-runner validate inputs-spec <yaml_file>

Argument	Description
`yaml_file`	Path to the inputs YAML file

validate outputs-spec#

Validate an outputs specification file.

bfabric-app-runner validate outputs-spec <yaml_file>

Argument	Description
`yaml_file`	Path to the outputs YAML file

CLI Reference

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