Deploying Apps

This guide covers how to build and deploy Python applications for use with bfabric-app-runner.

Build Process

Use uv to create reproducible builds. The process produces two artifacts:

• A wheel (.whl) file containing your application code (no dependencies).

• A pylock.toml file that reproducibly specifies all dependencies.

# Get the current package version
pkg_version=$(uv version --short)

# Build the wheel into a versioned directory
uv build -o "dist/$pkg_version"

# Lock and export dependencies
uv lock -U
uv export --no-emit-project --format pylock.toml > "dist/$pkg_version/pylock.toml"

# Clean up (uv build creates a .gitignore in the output dir)
rm -f "dist/$pkg_version/.gitignore"

Note

The pylock file must be named pylock.toml (or follow the standard naming convention). This constraint may be relaxed in future versions.

Deploying to the Server

Copy both the wheel and the pylock file into a versioned directory on the deployment server. A common convention is to organize by version number:

/home/bfabric/slurmworker/config/MY_APP/dist/
  4.7.8.dev2/
    pylock.toml
    my_app-4.7.8.dev2-py3-none-any.whl
  4.7.8.dev3/
    pylock.toml
    my_app-4.7.8.dev3-py3-none-any.whl

These files can be managed with git-lfs in the slurmworker configuration repository.

Referencing in app.yml

Once deployed, reference the wheel and pylock files in your app.yml using the ${app.version} template variable. This avoids duplicating paths across multiple version entries.

bfabric:
  app_runner: 0.1.0
versions:
  - version:
      - 4.7.8.dev2
    commands:
      dispatch:
        type: python_env
        pylock: /home/bfabric/slurmworker/config/A375_MZMINE/dist/${app.version}/pylock.toml
        local_extra_deps:
          - /home/bfabric/slurmworker/config/A375_MZMINE/dist/${app.version}/mzmine_app-${app.version}-py3-none-any.whl
        command: -m mzmine_app.integrations.bfabric.dispatch
      process:
        type: python_env
        pylock: /home/bfabric/slurmworker/config/A375_MZMINE/dist/${app.version}/pylock.toml
        local_extra_deps:
          - /home/bfabric/slurmworker/config/A375_MZMINE/dist/${app.version}/mzmine_app-${app.version}-py3-none-any.whl
        command: -m mzmine_app.integrations.bfabric.process
        env:
          MZMINE_CONTAINER_TAG: "4.7.8.p1"
          MZMINE_DATA_PATH: /home/bfabric/mzmine
        prepend_paths:
          - /home/bfabric/slurmworker/config/A375_MZMINE/bin
          - /home/bfabric/slurmworker/bin

Validation

After creating or updating your app.yml, validate it:

bfabric-app-runner validate app-spec app.yml

You can also provide optional context for template variable resolution:

bfabric-app-runner validate app-spec app.yml --app-id 123 --app-name my_app

The slurmworker repository includes a noxfile that validates all app YAML files at once using nox.

Checklist

1. Build the wheel and export the lock file using the snippet above.

2. Copy the dist/<version>/ directory to the server.

3. Update app.yml to reference the new version.

4. Validate with bfabric-app-runner validate app-spec.