Package index • exploreDE

Run the app

Write an .h5ad in the exploreDE/1.0 layout, open it as a dataset, and check it.

build_explore_h5ad(): Build a canonical exploreDE .h5ad from user-supplied data
new_explore_dataset(): Construct an ExploreDataset instance from a path, URL, or SE
validate_explore_dataset(): Runtime validator for a live ExploreDataset instance

The accessor API the app reads every dataset through, one class per storage backend.

ExploreDataset: Abstract base class for exploreDE's storage-agnostic dataset wrapper
ExploreDatasetH5AD: Concrete ExploreDataset backend over a canonical AnnData (.h5ad)
ExploreDatasetSE: Abstract intermediate class for SE-backed datasets
ExploreDatasetSE_CountQC: Concrete subclass for SUSHI CountQC SummarizedExperiment outputs
ExploreDatasetSE_CrisprCountQC: Concrete subclass for CRISPR Mageck CountQC outputs
ExploreDatasetSE_Proteomics: Concrete subclass for FGCZ proteomics SummarizedExperiment outputs
ExploreDatasetSE_RNASeq: Concrete subclass for SUSHI RNA-seq SummarizedExperiment outputs