Base class for all Contrasts classes
Base class for all Contrasts classes
int <- ContrastsInterface$new()
testthat::expect_error(int$get_contrast_sides())
testthat::expect_error(int$get_contrasts())
testthat::expect_error(int$get_Plotter())
testthat::expect_error(int$to_wide())
int$column_description()
#> column_name
#> modelName modelName
#> contrast contrast
#> avgAbd avgAbd
#> diff diff
#> FDR FDR
#> statistic statistic
#> std.error std.error
#> df df
#> p.value p.value
#> conf.low conf.low
#> conf.high conf.high
#> sigma sigma
#> description
#> modelName type of model
#> contrast name of difference e.g. group1_vs_group2
#> avgAbd mean abundance value of protein in all samples
#> diff difference among conditions
#> FDR false discovery rate
#> statistic t-statistics
#> std.error standard error
#> df degrees of freedom
#> p.value p-value
#> conf.low lower value of 95 confidence interval
#> conf.high high value of 95 confidence interval
#> sigma residual standard deviation of linear model (needed for empirical Bayes variance shrinkage).