R/tidyMS_R6_TransitionCorrelations.R
nr_B_in_A_per_sample.Rdhow many peptides per protein in each sample
nr_B_in_A_per_sample(data, config, nested = TRUE)Other summary:
INTERNAL_FUNCTIONS_BY_FAMILY,
hierarchy_counts(),
hierarchy_counts_sample(),
summarize_hierarchy()
bb <- prolfqua::sim_lfq_data_peptide_config()
#> creating sampleName from fileName column
#> Warning: no nr_children column specified in the data, adding column nr_children and setting to 1.
#> completing cases
nr_B_in_A_per_sample(bb$data, bb$config, nested =FALSE)
#> completing cases
#> # A tibble: 120 × 7
#> sample sampleName protein_Id group_ isotopeLabel nrPep present
#> <chr> <chr> <chr> <chr> <chr> <int> <dbl>
#> 1 A_V1 A_V1 0EfVhX~0087 A light 3 2
#> 2 A_V1 A_V1 7cbcrd~5725 A light 1 1
#> 3 A_V1 A_V1 9VUkAq~4703 A light 1 1
#> 4 A_V1 A_V1 BEJI92~5282 A light 2 2
#> 5 A_V1 A_V1 CGzoYe~2147 A light 1 1
#> 6 A_V1 A_V1 DoWup2~5896 A light 1 1
#> 7 A_V1 A_V1 Fl4JiV~8625 A light 4 3
#> 8 A_V1 A_V1 HvIpHG~9079 A light 2 1
#> 9 A_V1 A_V1 JcKVfU~9653 A light 7 7
#> 10 A_V1 A_V1 SGIVBl~5782 A light 6 4
#> # ℹ 110 more rows
bb <- prolfqua::sim_lfq_data_protein_config()
#> creating sampleName from fileName column
#> completing cases
nr_B_in_A_per_sample(bb$data, bb$config, nested=FALSE)
#> Warning: here is no B in A
#> completing cases
#> # A tibble: 120 × 7
#> sample sampleName protein_Id group_ isotopeLabel nrPep present
#> <chr> <chr> <chr> <chr> <chr> <int> <dbl>
#> 1 A_V1 A_V1 0EfVhX~0087 A light 1 1
#> 2 A_V1 A_V1 7cbcrd~5725 A light 1 1
#> 3 A_V1 A_V1 9VUkAq~4703 A light 1 1
#> 4 A_V1 A_V1 BEJI92~5282 A light 1 1
#> 5 A_V1 A_V1 CGzoYe~2147 A light 1 1
#> 6 A_V1 A_V1 DoWup2~5896 A light 1 0
#> 7 A_V1 A_V1 Fl4JiV~8625 A light 1 1
#> 8 A_V1 A_V1 HvIpHG~9079 A light 1 1
#> 9 A_V1 A_V1 JcKVfU~9653 A light 1 1
#> 10 A_V1 A_V1 SGIVBl~5782 A light 1 1
#> # ℹ 110 more rows