render MQ Summary.

render MQ Summary.

render_MQSummary_rmd(
  pdata,
  config,
  project_conf,
  pep = TRUE,
  dest_path = ".",
  dest_file_name = "QCandSampleSize.Rmd",
  workdir = tempdir(),
  format = c("pdf", "html"),
  markdown_path = c("doc/QCandSampleSize.Rmd")
)

Arguments

pdata

data.frame

config

AnalysisConfiguration

pep

are these peptide or protein data

dest_path

destination path

dest_file_name

name of pdf file

workdir

working directory

format

either pdf or html

project_config

list with workunit_Id project_Id order_Id

See also

Other vignetteHelpers: INTERNAL_FUNCTIONS_BY_FAMILY

Examples

bb <- prolfqua_data('data_skylinePRMSample_A')
config <- bb$config_f()
analysis <- bb$analysis(bb$data, bb$config_f())
#> creating sampleName from fileName column
#> Warning: no nr_children column specified in the data, adding column nr_children and setting to 1.
#> completing cases
projectConfig <- list(workunit_Id = "xx", project_Id = "xy", order_Id = "z")
if(FALSE){
render_MQSummary_rmd(analysis,
  config ,
  projectConfig,
  workdir= tempdir()) # tempdir(check = FALSE))
}