Transform intensity

transform_work_intensity(
  pdata,
  config,
  .func,
  .funcname = NULL,
  intesityNewName = NULL,
  deep = FALSE
)

Arguments

pdata: data.frame
config: AnalysisConfiguration
.func: function to transform intensities e.g. log2
.funcname: generates new name from name of transformation and old working intensity column name.
intesityNewName: column name for new intensity, default NULL

Value

data.frame

Examples


dd <- prolfqua_data('data_spectronautDIA250_A')
config <- dd$config_f()
analysis <- dd$analysis(dd$data,config)
#> creating sampleName from fileName column
#> Warning: no nr_children column specified in the data, adding column nr_children and setting to 1.
#> completing cases
x <- transform_work_intensity(analysis, config, .func = log2)
#> Column added : log2_FG.Quantity
stopifnot("log2_FG.Quantity" %in% colnames(x))
config <- dd$config_f()
x <- transform_work_intensity(analysis, config, .func = asinh)
#> Column added : asinh_FG.Quantity
stopifnot("asinh_FG.Quantity" %in% colnames(x))