esitmate lod

esitmate lod

Usage

estimate_lod_global(data_matrix, prop_na = 90)

Arguments

data_matrix

numeric matrix of abundance values

prop_na

numeric, percentage threshold for NA proportion per row

Examples

# example code
istar <- sim_lfq_data_peptide_config()
#> creating sampleName from fileName column
#> completing cases
#> completing cases done
#> setup done
lfqdata <- LFQData$new(istar$data, istar$config)
xx <- lfqdata$to_wide(as.matrix=TRUE)
stopifnot(length(estimate_lod_global(xx$data, prop_na = 90)) == 0)
stopifnot(length(estimate_lod_global(xx$data, prop_na = 10)) > 0)