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Extracts uniprot ID

Source: R/utilities.R
get_UniprotID_from_fasta_header.Rd

Extracts uniprot ID

Usage

get_UniprotID_from_fasta_header(df, idcolumn = "protein_Id")

Arguments

df

data.frame

idcolumn

character, column name to extract uniprot IDs from

Value

data.frame

See also

Other utilities: INTERNAL_FUNCTIONS_BY_FAMILY, matrix_to_tibble(), multigroup_volcano(), names_to_matrix(), pairs_smooth(), pairs_w_abline(), panel_cor(), panel_hist(), remove_NA_rows(), table_facade()

Examples


bb <- prolfqua_data('data_ionstar')$filtered()
#> Column added : nr_peptide_Id_IN_protein_Id
tmp <- prolfqua::separate_hierarchy(bb$data,old2new( bb$config))
tmp$UniprotID <- NULL
tmp <- get_UniprotID_from_fasta_header(tmp, idcolumn = "top_protein")
stopifnot("UniprotID" %in%  colnames(tmp))