Median polish estimate of e.g. protein from peptide intensities

Compute Tukey's median polish estimate of a protein from peptide or precursor intensities

Usage

medpolish_estimate(x, name = FALSE, sample_name = "sample_name")

Arguments

x

a matrix

name

if TRUE returns the name of the summary column

Value

data.frame with number of rows equal to number of columns of input matrix.

See also

Other aggregation: INTERNAL_FUNCTIONS_BY_FAMILY, aggregate_intensity_top_n(), estimate_intensity(), medpolish_estimate_df(), medpolish_estimate_dfconfig(), plot_estimate(), plot_hierarchies_add_quantline(), plot_hierarchies_line(), plot_hierarchies_line_df(), rlm_estimate(), rlm_estimate_dfconfig()

Examples

medpolish_estimate(name = TRUE)
#> [1] "medpolish"
gg <- matrix(runif(20), 4, 5)
rownames(gg) <- paste0("A", 1:4)
colnames(gg) <- make.names(1:5)
gg
#>           X1        X2        X3        X4        X5
#> A1 0.7632898 0.7803197 0.5361660 0.4360611 0.2545601
#> A2 0.5954093 0.7726932 0.1222112 0.4074585 0.3212214
#> A3 0.1549417 0.1250399 0.2466832 0.4562199 0.9451113
#> A4 0.3634406 0.2959067 0.6546365 0.9651190 0.3863420
mx <- medpolish_estimate(gg)