R/tidyMS_aggregation.R
plot_hierarchies_add_quantline.RdAdd protein estimate to plot of peptide intensities
plot_hierarchies_add_quantline(p, data, aes_y, configuration)Other aggregation:
INTERNAL_FUNCTIONS_BY_FAMILY,
aggregate_intensity_topN(),
estimate_intensity(),
intensity_summary_by_hkeys(),
medpolish_estimate(),
medpolish_estimate_df(),
medpolish_estimate_dfconfig(),
medpolish_protein_estimates(),
plot_estimate(),
plot_hierarchies_line(),
plot_hierarchies_line_df(),
rlm_estimate(),
rlm_estimate_dfconfig()
Other plotting:
ContrastsPlotter,
INTERNAL_FUNCTIONS_BY_FAMILY,
UpSet_interaction_missing_stats(),
UpSet_missing_stats(),
medpolish_estimate_df(),
missigness_histogram(),
missingness_per_condition(),
missingness_per_condition_cumsum(),
plot_NA_heatmap(),
plot_estimate(),
plot_heatmap(),
plot_heatmap_cor(),
plot_heatmap_cor_iheatmap(),
plot_hierarchies_boxplot_df(),
plot_hierarchies_line(),
plot_hierarchies_line_df(),
plot_intensity_distribution_violin(),
plot_pca(),
plot_raster(),
plot_sample_correlation(),
plot_screeplot()
#todo