plot heatmap of NA values
plot_NA_heatmap(data, config, limitrows = 10000, distance = "binary")Other plotting:
ContrastsPlotter,
INTERNAL_FUNCTIONS_BY_FAMILY,
UpSet_interaction_missing_stats(),
UpSet_missing_stats(),
medpolish_estimate_df(),
missigness_histogram(),
missingness_per_condition(),
missingness_per_condition_cumsum(),
plot_estimate(),
plot_heatmap(),
plot_heatmap_cor(),
plot_hierarchies_add_quantline(),
plot_hierarchies_boxplot_df(),
plot_hierarchies_line(),
plot_hierarchies_line_df(),
plot_intensity_distribution_violin(),
plot_pca(),
plot_raster(),
plot_sample_correlation(),
plot_screeplot()
istar <- sim_lfq_data_peptide_config()
#> creating sampleName from fileName column
#> Warning: no nr_children column specified in the data, adding column nr_children and setting to 1.
#> completing cases
config <- istar$config
analysis <- istar$data
tmp <- plot_NA_heatmap(analysis, config)
#> rows with NA's: 16; all rows :28
stopifnot(class(tmp) == "pheatmap")
tmp <- plot_NA_heatmap(analysis, config, distance = "euclidean")
#> rows with NA's: 16; all rows :28
stopifnot(class(tmp) == "pheatmap")