visualize intensity distributions
visualize intensity distributions
plot_intensity_distribution_violin(pdata, config)
plot_intensity_distribution_density(pdata, config, legend = TRUE)See also
Other plotting:
ContrastsPlotter,
INTERNAL_FUNCTIONS_BY_FAMILY,
UpSet_interaction_missing_stats(),
UpSet_missing_stats(),
medpolish_estimate_df(),
missigness_histogram(),
missingness_per_condition(),
missingness_per_condition_cumsum(),
plot_NA_heatmap(),
plot_estimate(),
plot_heatmap(),
plot_heatmap_cor(),
plot_heatmap_cor_iheatmap(),
plot_hierarchies_add_quantline(),
plot_hierarchies_boxplot_df(),
plot_hierarchies_line(),
plot_hierarchies_line_df(),
plot_pca(),
plot_raster(),
plot_sample_correlation(),
plot_screeplot()
Other plotting:
ContrastsPlotter,
INTERNAL_FUNCTIONS_BY_FAMILY,
UpSet_interaction_missing_stats(),
UpSet_missing_stats(),
medpolish_estimate_df(),
missigness_histogram(),
missingness_per_condition(),
missingness_per_condition_cumsum(),
plot_NA_heatmap(),
plot_estimate(),
plot_heatmap(),
plot_heatmap_cor(),
plot_heatmap_cor_iheatmap(),
plot_hierarchies_add_quantline(),
plot_hierarchies_boxplot_df(),
plot_hierarchies_line(),
plot_hierarchies_line_df(),
plot_pca(),
plot_raster(),
plot_sample_correlation(),
plot_screeplot()
Examples
istar <-sim_lfq_data_peptide_config()
#> creating sampleName from fileName column
#> completing cases
#> completing cases done
#> setup done
config <- istar$config
analysis <- istar$data
plot_intensity_distribution_violin(analysis, config)
#> Warning: Removed 36 rows containing non-finite outside the scale range
#> (`stat_ydensity()`).
#> Warning: Removed 36 rows containing non-finite outside the scale range
#> (`stat_summary()`).
analysis <- transform_work_intensity(analysis, config, log2)
#> Column added : log2_abundance
plot_intensity_distribution_violin(analysis, config)
#> Warning: Removed 36 rows containing non-finite outside the scale range
#> (`stat_ydensity()`).
#> Warning: Removed 36 rows containing non-finite outside the scale range
#> (`stat_summary()`).
istar <-sim_lfq_data_peptide_config()
#> creating sampleName from fileName column
#> completing cases
#> completing cases done
#> setup done
config <- istar$config
analysis <- istar$data
plot_intensity_distribution_density(analysis, config)
#> Warning: Removed 36 rows containing non-finite outside the scale range
#> (`stat_density()`).
analysis <- transform_work_intensity(analysis, config, log2)
#> Column added : log2_abundance
plot_intensity_distribution_density(analysis, config)
#> Warning: Removed 36 rows containing non-finite outside the scale range
#> (`stat_density()`).
