Histogram summarizing missigness

Histogram summarizing missigness

missigness_histogram(
  x,
  config,
  showempty = FALSE,
  factors = config$table$factor_keys_depth(),
  alpha = 0.1
)

See also

Other plotting: ContrastsPlotter, INTERNAL_FUNCTIONS_BY_FAMILY, UpSet_interaction_missing_stats(), UpSet_missing_stats(), medpolish_estimate_df(), missingness_per_condition(), missingness_per_condition_cumsum(), plot_NA_heatmap(), plot_estimate(), plot_heatmap(), plot_heatmap_cor(), plot_heatmap_cor_iheatmap(), plot_hierarchies_add_quantline(), plot_hierarchies_boxplot_df(), plot_hierarchies_line(), plot_hierarchies_line_df(), plot_intensity_distribution_violin(), plot_pca(), plot_raster(), plot_sample_correlation(), plot_screeplot()

Other imputation: UpSet_interaction_missing_stats(), UpSet_missing_stats(), get_contrast(), missingness_per_condition(), missingness_per_condition_cumsum()

Examples

istar <- sim_lfq_data_peptide_config()
#> creating sampleName from fileName column
#> completing cases
#> completing cases done
#> setup done
config <- istar$config
analysis <- istar$data
xx <- complete_cases(analysis, config)
#> completing cases
pl <- missigness_histogram(xx, config)
#> Warning: >>>> deprecated! <<<< 
#> 
#>           use summarize_stats_factors instead.
#> completing cases
#> isotopeLabel ~ group_

pl <- missigness_histogram(analysis, config, showempty=FALSE)
#> Warning: >>>> deprecated! <<<< 
#> 
#>           use summarize_stats_factors instead.
#> completing cases
#> isotopeLabel ~ group_
stopifnot("ggplot" %in% class(pl))
pl <- missigness_histogram(analysis, config, showempty=TRUE)
#> Warning: >>>> deprecated! <<<< 
#> 
#>           use summarize_stats_factors instead.
#> completing cases
#> isotopeLabel ~ group_
stopifnot("ggplot" %in% class(pl))