UpSetR plot from interaction_missing_stats

UpSetR plot from interaction_missing_stats

Usage

UpSet_interaction_missing_stats(data, cf, tr = 2)

Arguments

data

data.frame

cf

AnalysisConfiguration

tr

if less than tr observations in condition then missing

See also

Other plotting: ContrastsPlotter, INTERNAL_FUNCTIONS_BY_FAMILY, UpSet_missing_stats(), medpolish_estimate_df(), missigness_histogram(), missingness_per_condition(), missingness_per_condition_cumsum(), plot_NA_heatmap(), plot_estimate(), plot_heatmap(), plot_heatmap_cor(), plot_hierarchies_add_quantline(), plot_hierarchies_boxplot_df(), plot_hierarchies_line(), plot_hierarchies_line_df(), plot_intensity_distribution_violin(), plot_pca(), plot_raster(), plot_sample_correlation()

Other imputation: UpSet_missing_stats(), get_contrast(), missigness_histogram(), missingness_per_condition(), missingness_per_condition_cumsum()

Examples

istar <- sim_lfq_data_peptide_config()
#> creating sampleName from file_name column
#> completing cases
#> completing cases done
#> setup done
config <- istar$config
analysis <- istar$data

pups <- UpSet_interaction_missing_stats(analysis, config)
#> completing cases
stopifnot(ncol(pups$data) == 5)
UpSetR::upset(pups$data, order.by = "freq", nsets = pups$nsets)