plot heatmap with annotations — plot_heatmap • prolfqua

plot heatmap with annotations

plot_heatmap(data, config, na_fraction = 0.4, show_rownames = FALSE, ...)

Arguments

na_fraction: fraction of NA values per row
show_rownames: if TRUE shows row names, default FALSE

See also

Other plotting: ContrastsPlotter, INTERNAL_FUNCTIONS_BY_FAMILY, UpSet_interaction_missing_stats(), UpSet_missing_stats(), medpolish_estimate_df(), missigness_histogram(), missingness_per_condition(), missingness_per_condition_cumsum(), plot_NA_heatmap(), plot_estimate(), plot_heatmap_cor(), plot_heatmap_cor_iheatmap(), plot_hierarchies_add_quantline(), plot_hierarchies_boxplot_df(), plot_hierarchies_line(), plot_hierarchies_line_df(), plot_intensity_distribution_violin(), plot_pca(), plot_raster(), plot_sample_correlation(), plot_screeplot()

Examples


istar <- sim_lfq_data_protein_config()
#> creating sampleName from fileName column
#> completing cases
#> completing cases done
#> setup done
config <- istar$config
analysis <- istar$data


p  <- plot_heatmap(analysis, config)
stopifnot(class(p) == "pheatmap")
p2 <- plot_heatmap(analysis, config, show_rownames = TRUE)
stopifnot(class(p) == "pheatmap")