Analysis parameters

Analysis parameters

See also

Other configuration: AnalysisConfiguration, AnalysisTableAnnotation, INTERNAL_FUNCTIONS_BY_FAMILY, R6_extract_values(), complete_cases(), concrete_AnalysisConfiguration, make_interaction_column(), make_reduced_hierarchy_config(), sample_subset(), separate_factors(), separate_hierarchy(), setup_analysis(), spread_response_by_IsotopeLabel(), table_factors(), table_factors_size()

Public fields

qVal_individual_threshold

qValue threshold for sample

qVal_experiment_threshold

qValue threshold for dataset

qVal_minNumber_below_experiment_threshold

how many samples need to meet qVal_experiment_threshold

min_nr_of_notNA

minimum number of not NA's in all samples default 1

min_nr_of_notNA_condition

minimum number of not NA's in interaction

min_peptides_protein

minimum number of peptides per protein

Methods

Public methods

• AnalysisParameters$clone()

---

Method clone()

The objects of this class are cloneable with this method.

Usage

AnalysisParameters$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.