Setup a tidy table compatible with a AnalysisConfiguration

Extracts columns relevant for a configuration from a data frame and create new columns e.g. sampleName column etc.

setup_analysis(data, configuration, cc = TRUE, from_factors = FALSE)

Arguments

data

data.frame

cc

complete cases default TRUE

config

AnlalysisConfiguration

See also

Other configuration: AnalysisConfiguration, AnalysisParameters, AnalysisTableAnnotation, INTERNAL_FUNCTIONS_BY_FAMILY, R6_extract_values(), complete_cases(), concrete_AnalysisConfiguration, make_interaction_column(), make_reduced_hierarchy_config(), sample_subset(), separate_factors(), separate_hierarchy(), spread_response_by_IsotopeLabel(), table_factors(), table_factors_size()

Examples

skylineconfig <- create_config_Skyline(isotopeLabel = "Isotope.Label.Type",
 ident_qValue = "Detection.Q.Value")
skylineconfig$table$factors[["Time"]] = "Sampling.Time.Point"
sample_analysis <- setup_analysis(prolfqua_data('data_skylinePRMSample_A')$data, skylineconfig)
#> creating sampleName from fileName column
#> Warning: no nr_children column specified in the data, adding column nr_children and setting to 1.
#> completing cases
#> completing cases done
#> setup done