R/AnalysisConfiguration.R
make_reduced_hierarchy_config.RdMake reduced hierarchy configuration
make_reduced_hierarchy_config(config, workIntensity, hierarchy)AnalysisConfiguration
work intensity column
new reduced hierarchy
AnalysisConfiguration with reduced hieararchy
Other configuration:
AnalysisConfiguration,
AnalysisParameters,
AnalysisTableAnnotation,
INTERNAL_FUNCTIONS_BY_FAMILY,
R6_extract_values(),
complete_cases(),
concrete_AnalysisConfiguration,
make_interaction_column(),
sample_subset(),
separate_factors(),
separate_hierarchy(),
setup_analysis(),
spread_response_by_IsotopeLabel(),
table_factors()
bb <- prolfqua::sim_lfq_data_peptide_config()
#> creating sampleName from fileName column
#> Warning: no nr_children column specified in the data, adding column nr_children and setting to 1.
#> completing cases
red <- make_reduced_hierarchy_config(bb$config,
"testintensity",
bb$config$table$hierarchy[1])
stopifnot(red$table$get_response() == "testintensity")
stopifnot(length(red$table$hierarchy) == 1)