Table of distinct factors with group sizes

Table of distinct factors with group sizes

Usage

table_factors_size(
  pdata,
  file_name,
  sample_name,
  factor_keys,
  factor_keys_depth
)

Arguments

pdata

data.frame

file_name

character — file name column

sample_name

character — sample name column

factor_keys

character vector — all factor column names

factor_keys_depth

character vector — factor columns at current depth

See also

Other configuration: AnalysisConfiguration, ContrastConfiguration, INTERNAL_FUNCTIONS_BY_FAMILY, R6_extract_values(), complete_cases(), list_to_ContrastConfiguration(), make_interaction_column(), make_reduced_hierarchy_config(), sample_subset(), separate_hierarchy(), setup_analysis(), table_factors()

Examples

istar <- sim_lfq_data_peptide_config()
#> creating sampleName from file_name column
#> completing cases
#> completing cases done
#> setup done
lfq <- LFQData$new(istar$data, istar$config)
xx <- table_factors_size(lfq$data_long(), lfq$file_name(),
  lfq$sample_name(), lfq$factor_keys(), lfq$relevant_factor_keys())
stopifnot(all(xx$n == 4))