create interaction column from factors

create interaction column from factors

Usage

make_interaction_column(data, columns, sep = ".")

See also

Other configuration: AnalysisConfiguration, ContrastConfiguration, INTERNAL_FUNCTIONS_BY_FAMILY, R6_extract_values(), complete_cases(), list_to_ContrastConfiguration(), make_reduced_hierarchy_config(), sample_subset(), separate_hierarchy(), setup_analysis(), table_factors(), table_factors_size()

Examples

xx <- data.frame(A = c("a","a","a"), B = c("d","d","e"))
x <- make_interaction_column(xx, c("B","A"))
x <- make_interaction_column(xx, c("A"))
bb <- prolfqua::sim_lfq_data_protein_config()
#> creating sampleName from file_name column
#> completing cases
#> completing cases done
#> setup done
config <- bb$config
analysis <- bb$data

config$factor_depth <- 1
make_interaction_column(analysis,
   config$factor_keys_depth())
#> # A tibble: 120 × 9
#>    sample sampleName group_ isotopeLabel protein_Id  abundance qValue nrPeptides
#>    <chr>  <chr>      <chr>  <chr>        <chr>           <dbl>  <dbl>      <dbl>
#>  1 A_V1   A_V1       A      light        0EfVhX~0087      20.1      0          3
#>  2 A_V1   A_V1       A      light        7cbcrd~5725      22.0      0          1
#>  3 A_V1   A_V1       A      light        9VUkAq~4703      19.8      0          1
#>  4 A_V1   A_V1       A      light        BEJI92~5282      21.2      0          2
#>  5 A_V1   A_V1       A      light        CGzoYe~2147      29.4      0          1
#>  6 A_V1   A_V1       A      light        DoWup2~5896      NA       NA         NA
#>  7 A_V1   A_V1       A      light        Fl4JiV~8625      20.1      0          4
#>  8 A_V1   A_V1       A      light        HvIpHG~9079      21.7      0          2
#>  9 A_V1   A_V1       A      light        JcKVfU~9653      34.5      0          7
#> 10 A_V1   A_V1       A      light        SGIVBl~5782      23.9      0          6
#> # ℹ 110 more rows
#> # ℹ 1 more variable: interaction <fct>