Rebuild a ContrastConfiguration from a list

Round-trip partner of R6_extract_values, which keeps the fields but drops the methods. Use it to restore the column-role mapping from a serialized result artifact (e.g. `SummarizedExperiment` metadata or an AnnData `uns` entry) so consumers can call has_pvalue() and friends again.

Usage

list_to_ContrastConfiguration(dd)

Arguments

dd

named list of ContrastConfiguration fields

Value

A ContrastConfiguration.

See also

Other configuration: AnalysisConfiguration, ContrastConfiguration, INTERNAL_FUNCTIONS_BY_FAMILY, R6_extract_values(), complete_cases(), make_interaction_column(), make_reduced_hierarchy_config(), sample_subset(), separate_hierarchy(), setup_analysis(), table_factors(), table_factors_size()

Examples

cfg <- ContrastConfiguration$new(
  subject_id = "protein_Id",
  contrast_col = "Bait",
  pvalue_col = NA_character_
)
values <- R6_extract_values(cfg)
restored <- list_to_ContrastConfiguration(values)
stopifnot(all.equal(R6_extract_values(restored), values))
restored$has_pvalue()
#> [1] FALSE