plot density distribution or ecdf of sd, mean or CV

plot density distribution or ecdf of sd, mean or CV

Usage

plot_stat_density(
  pdata,
  factor_key,
  stat = c("CV", "meanAbundance", "sd"),
  ggstat = c("density", "ecdf")
)

Arguments

pdata

data.frame with statistics

factor_key

character — factor column name for colouring

stat

sd, mean or CV

ggstat

either density or ecdf

See also

Other stats: INTERNAL_FUNCTIONS_BY_FAMILY, lfq_power_t_test_proteins(), lfq_power_t_test_quantiles(), lfq_power_t_test_quantiles_V2(), plot_stat_density_median(), plot_stat_violin(), plot_stat_violin_median(), plot_stdv_vs_mean(), pooled_V2(), summarize_stats()

Examples

bb1 <- prolfqua::sim_lfq_data_peptide_config()
#> creating sampleName from file_name column
#> completing cases
#> completing cases done
#> setup done
lfq <- LFQData$new(bb1$data, bb1$config)
res <- lfq$get_Stats()$stats()
plot_stat_density(res, lfq$factor_keys()[1], stat = "meanAbundance")

plot_stat_density(res, lfq$factor_keys()[1], stat = "sd")
#> Warning: Removed 2 rows containing non-finite outside the scale range
#> (`stat_density()`).

plot_stat_density(res, lfq$factor_keys()[1], stat = "CV")
#> Warning: Removed 2 rows containing non-finite outside the scale range
#> (`stat_density()`).