plot Violin plot of sd CV or mean given intensity lower or above median — plot_stat_violin_median • prolfqua

plot Violin plot of sd CV or mean given intensity lower or above median

Usage

plot_stat_violin_median(
  pdata,
  factor_key,
  stat = c("CV", "meanAbundance", "sd")
)

Arguments

pdata: data.frame with statistics
factor_key: character — factor column name for x-axis
stat: either CV, mean or sd

See also

Other stats: INTERNAL_FUNCTIONS_BY_FAMILY, lfq_power_t_test_proteins(), lfq_power_t_test_quantiles(), lfq_power_t_test_quantiles_V2(), plot_stat_density(), plot_stat_density_median(), plot_stat_violin(), plot_stdv_vs_mean(), pooled_V2(), summarize_stats()

Examples


bb1 <- prolfqua::sim_lfq_data_peptide_config()
#> creating sampleName from file_name column
#> completing cases
#> completing cases done
#> setup done
lfq <- LFQData$new(bb1$data, bb1$config)
res <- lfq$get_Stats()$stats()
plot_stat_violin_median(res, lfq$factor_keys()[1], stat = "meanAbundance")