plot Violin plot of sd CV or mean given intensity lower or above median — plot_stat_violin_median • prolfqua

plot Violin plot of sd CV or mean given intensity lower or above median

plot_stat_violin_median(pdata, config, stat = c("CV", "meanAbundance", "sd"))

Arguments

pdata: data.frame
config: AnalysisConfiguration
stat: either CV, mean or sd

See also

Other stats: INTERNAL_FUNCTIONS_BY_FAMILY, lfq_power_t_test_proteins(), lfq_power_t_test_quantiles(), lfq_power_t_test_quantiles_V2(), plot_stat_density(), plot_stat_density_median(), plot_stat_violin(), plot_stdv_vs_mean(), pooled_V2(), summarize_stats()

Examples



bb1 <- prolfqua::sim_lfq_data_peptide_config()
#> creating sampleName from fileName column
#> Warning: no nr_children column specified in the data, adding column nr_children and setting to 1.
#> completing cases
config <- bb1$config
data <- bb1$data
res <- summarize_stats(data, config)
#> [1] "group_"
#> completing cases
plot_stat_violin_median(res, config, stat = "meanAbundance")