plot density distribution or ecdf of sd, mean or cv given intensity below and above median

plot density distribution or ecdf of sd, mean or cv given intensity below and above median

plot_stat_density_median(
  pdata,
  config,
  stat = c("CV", "meanAbundance", "sd"),
  ggstat = c("density", "ecdf")
)

Arguments

pdata

data.frame

config

AnalysisConfiguration

stat

sd, mean or CV

ggstat

either density of ecdf

See also

Other stats: INTERNAL_FUNCTIONS_BY_FAMILY, lfq_power_t_test_proteins(), lfq_power_t_test_quantiles(), lfq_power_t_test_quantiles_V2(), plot_stat_density(), plot_stat_violin(), plot_stat_violin_median(), plot_stdv_vs_mean(), pooled_V2(), summarize_stats()

Examples

bb1 <- prolfqua::sim_lfq_data_peptide_config()
#> creating sampleName from fileName column
#> Warning: no nr_children column specified in the data, adding column nr_children and setting to 1.
#> completing cases
config <- bb1$config
data2 <- bb1$data
res <- summarize_stats(data2, config)
#> [1] "group_"
#> completing cases
plot_stat_density_median(res, config, "CV")

plot_stat_density_median(res, config, "meanAbundance")

plot_stat_density_median(res, config, "sd")