plot density distribution or ecdf of sd, mean or cv given intensity below and above median

plot density distribution or ecdf of sd, mean or cv given intensity below and above median

Usage

plot_stat_density_median(
  pdata,
  factor_key,
  stat = c("CV", "meanAbundance", "sd"),
  ggstat = c("density", "ecdf")
)

Arguments

pdata

data.frame with statistics

factor_key

character — factor column name for faceting

stat

sd, mean or CV

ggstat

either density or ecdf

See also

Other stats: INTERNAL_FUNCTIONS_BY_FAMILY, lfq_power_t_test_proteins(), lfq_power_t_test_quantiles(), lfq_power_t_test_quantiles_V2(), plot_stat_density(), plot_stat_violin(), plot_stat_violin_median(), plot_stdv_vs_mean(), pooled_V2(), summarize_stats()

Examples

bb1 <- prolfqua::sim_lfq_data_peptide_config()
#> creating sampleName from file_name column
#> completing cases
#> completing cases done
#> setup done
lfq <- LFQData$new(bb1$data, bb1$config)
res <- lfq$get_Stats()$stats()
plot_stat_density_median(res, lfq$factor_keys()[1], "CV")

plot_stat_density_median(res, lfq$factor_keys()[1], "meanAbundance")

plot_stat_density_median(res, lfq$factor_keys()[1], "sd")